3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04390

Details:

PFam ID : PF04390

PFam Domain Description : Lipopolysaccharide-assembly

Number of Sequence in 50% Dataset : 250

Number of Sequence in Full Dataset : 655

Average sequence length: 154.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04390	E0VQ17_PEDHC_188_225	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04390	Q6MN03_BDEBA_33_213	99.2

Sequence based PCA Plot of the family - PF04390 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=116 Length=8
Motif2 Start=141 Length=8
Motif3 Start=130 Length=8
Motif4 Start=10 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay