3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04385

Details:

PFam ID : PF04385

PFam Domain Description : Domain of unknown function, DUF529

Number of Sequence in 50% Dataset : 252

Number of Sequence in Full Dataset : 907

Average sequence length: 76.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04385	B3L705_PLAKH_68_133	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04385	Q4UBL4_THEAN_1_56	97.1

Sequence based PCA Plot of the family - PF04385 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=48 Length=8
Motif4 Start=39 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay