3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04384

Details:

PFam ID : PF04384

PFam Domain Description : Iron-sulphur cluster assembly

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 171

Average sequence length: 63.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04384	B3L705_PLAKH_68_133	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04384	C5LYH8_9ALVE_21_85	100

Sequence based PCA Plot of the family - PF04384 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=15 Length=8
Motif2 Start=26 Length=8
Motif3 Start=3 Length=8
Motif4 Start=55 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay