3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04380

Details:

PFam ID : PF04380

PFam Domain Description : Membrane fusogenic activity

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 309

Average sequence length: 77.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04380	D1TTD0_YERPE_1_36	3.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04380	A0Y9D2_9GAMM_1_82	100

Sequence based PCA Plot of the family - PF04380 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=48 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay