3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04377

Details:

PFam ID : PF04377

PFam Domain Description : Arginine-tRNA-protein transferase, C terminus

Number of Sequence in 50% Dataset : 49

Number of Sequence in Full Dataset : 455

Average sequence length: 133.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04377	C7Z0U2_NECH7_166_212	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04377	C1MIL7_MICPC_296_505	100

Sequence based PCA Plot of the family - PF04377 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=144 Length=8
Motif2 Start=27 Length=8
Motif3 Start=192 Length=8
Motif4 Start=4 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay