3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04376

Details:

PFam ID : PF04376

PFam Domain Description : Arginine-tRNA-protein transferase, N terminus

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 410

Average sequence length: 76.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04376	A7BU11_9GAMM_1_41	86.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04376	E7RAG4_PICAD_12_112	100

Sequence based PCA Plot of the family - PF04376 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=14
Motif2 Start=68 Length=8
Motif3 Start=49 Length=8
Motif4 Start=38 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay