3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04375

Details:

PFam ID : PF04375

PFam Domain Description : HemX

Number of Sequence in 50% Dataset : 87

Number of Sequence in Full Dataset : 293

Average sequence length: 353.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04375	Q3BZ82_XANC5_5_325	40.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04375	B8KSU6_9GAMM_272_678	100

Sequence based PCA Plot of the family - PF04375 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=182 Length=8
Motif2 Start=284 Length=8
Motif3 Start=201 Length=8
Motif4 Start=296 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay