3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04366

Details:

PFam ID : PF04366

PFam Domain Description : Family of unknown function (DUF500)

Number of Sequence in 50% Dataset : 74

Number of Sequence in Full Dataset : 460

Average sequence length: 113.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04366	B8B3K6_ORYSI_524_586	68.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04366	B8C6L2_THAPS_545_722	100

Sequence based PCA Plot of the family - PF04366 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=24 Length=8
Motif2 Start=15 Length=8
Motif3 Start=6 Length=8
Motif4 Start=138 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay