3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04364

Details:

PFam ID : PF04364

PFam Domain Description : DNA polymerase III chi subunit, HolC

Number of Sequence in 50% Dataset : 82

Number of Sequence in Full Dataset : 378

Average sequence length: 136.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04364	A5CC58_ORITB_1_125	98.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04364	A5WBH1_PSYWF_1_161	100

Sequence based PCA Plot of the family - PF04364 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=8 Length=8
Motif2 Start=110 Length=8
Motif3 Start=33 Length=21

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay