3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04362

Details:

PFam ID : PF04362

PFam Domain Description : Bacterial Fe(2+) trafficking

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 215

Average sequence length: 86.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04362	C4UIJ4_YERRU_1_46	20

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04362	D8PGR9_9BACT_1_87	100

Sequence based PCA Plot of the family - PF04362 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=36 Length=11
Motif2 Start=3 Length=17
Motif3 Start=27 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay