3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04358

Details:

PFam ID : PF04358

PFam Domain Description : DsrC like protein

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 288

Average sequence length: 105.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04358	A4WMS5_PYRAR_7_105	78.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04358	Q3SJ52_THIDA_2_115	100

Sequence based PCA Plot of the family - PF04358 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=10 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay