3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04357

Details:

PFam ID : PF04357

PFam Domain Description : Family of unknown function (DUF490)

Number of Sequence in 50% Dataset : 352

Number of Sequence in Full Dataset : 858

Average sequence length: 353.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04357	B8KRL9_9GAMM_1_32	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04357	D1AKX2_SEBTE_1076_1478	98.4

Sequence based PCA Plot of the family - PF04357 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=131 Length=8
Motif4 Start=10 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay