3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04354

Details:

PFam ID : PF04354

PFam Domain Description : ZipA, C-terminal FtsZ-binding domain

Number of Sequence in 50% Dataset : 45

Number of Sequence in Full Dataset : 210

Average sequence length: 125.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04354	B6BTY7_9PROT_204_332	25

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04354	F1WC96_MORCA_184_316	100

Sequence based PCA Plot of the family - PF04354 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=29 Length=11
Motif3 Start=101 Length=8
Motif4 Start=71 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay