3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04348

Details:

PFam ID : PF04348

PFam Domain Description : LppC putative lipoprotein

Number of Sequence in 50% Dataset : 103

Number of Sequence in Full Dataset : 279

Average sequence length: 392.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04348	F0CC87_9XANT_43_231	99.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04348	A1SU48_PSYIN_66_665	100

Sequence based PCA Plot of the family - PF04348 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=188 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay