3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04347

Details:

PFam ID : PF04347

PFam Domain Description : FliP family

Number of Sequence in 50% Dataset : 206

Number of Sequence in Full Dataset : 582

Average sequence length: 90.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04347	Q0EZ60_9PROT_27_99	51.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04347	A9HHD4_GLUDA_36_116	100

Sequence based PCA Plot of the family - PF04347 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=21
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay