3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04345

Details:

PFam ID : PF04345

PFam Domain Description : Chorismate lyase

Number of Sequence in 50% Dataset : 75

Number of Sequence in Full Dataset : 268

Average sequence length: 164.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04345	B1XVG6_POLNS_8_130	98.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04345	UBIC_COLP3_15_206	100

Sequence based PCA Plot of the family - PF04345 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=56 Length=8
Motif2 Start=113 Length=8
Motif3 Start=1 Length=8
Motif4 Start=79 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay