3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04344

Details:

PFam ID : PF04344

PFam Domain Description : Chemotaxis phosphatase, CheZ

Number of Sequence in 50% Dataset : 55

Number of Sequence in Full Dataset : 289

Average sequence length: 168.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04344	B8FEH8_DESAA_306_533	87.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04344	B8FEH8_DESAA_306_533	100

Sequence based PCA Plot of the family - PF04344 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=30 Length=11
Motif2 Start=210 Length=8
Motif3 Start=229 Length=8
Motif4 Start=138 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay