3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04335

Details:

PFam ID : PF04335

PFam Domain Description : VirB8 protein

Number of Sequence in 50% Dataset : 168

Number of Sequence in Full Dataset : 456

Average sequence length: 200.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04335	C7N9P4_LEPBD_1_123	88.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04335	D7N4L0_9NEIS_17_239	97.5

Sequence based PCA Plot of the family - PF04335 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=89 Length=8
Motif3 Start=49 Length=8
Motif4 Start=209 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay