3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04333

Details:

PFam ID : PF04333

PFam Domain Description : VacJ like lipoprotein

Number of Sequence in 50% Dataset : 69

Number of Sequence in Full Dataset : 458

Average sequence length: 199.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04333	D8P8M1_9BACT_91_311	98.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04333	D8P8M1_9BACT_91_311	100

Sequence based PCA Plot of the family - PF04333 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=2 Length=8
Motif2 Start=23 Length=23
Motif3 Start=95 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay