3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04326

Details:

PFam ID : PF04326

PFam Domain Description : Divergent AAA domain

Number of Sequence in 50% Dataset : 410

Number of Sequence in Full Dataset : 1151

Average sequence length: 122.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04326	Q2FPW2_METHJ_1_121	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04326	Q6NTK7_XENLA_199_386	100

Sequence based PCA Plot of the family - PF04326 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=14
Motif2 Start=1 Length=17
Motif3 Start=35 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay