3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04324

Details:

PFam ID : PF04324

PFam Domain Description : 4Fe-4S binding domain

Number of Sequence in 50% Dataset : 56

Number of Sequence in Full Dataset : 1870

Average sequence length: 54.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04324	Q2FPW2_METHJ_1_121	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04324	Q486G1_COLP3_11_63	98.7

Sequence based PCA Plot of the family - PF04324 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=31 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=22 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay