3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04319

Details:

PFam ID : PF04319

PFam Domain Description : NifZ domain

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 123

Average sequence length: 74.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04319	D5CPY6_SIDLE_1_88	45.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04319	D5CPY6_SIDLE_1_88	100

Sequence based PCA Plot of the family - PF04319 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=35 Length=8
Motif2 Start=2 Length=11
Motif3 Start=18 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay