3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04317

Details:

PFam ID : PF04317

PFam Domain Description : YcjX-like family, DUF463

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 178

Average sequence length: 427.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04317	D6SUC7_9DELT_15_447	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04317	Q47XN4_COLP3_33_490	100

Sequence based PCA Plot of the family - PF04317 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=80 Length=8
Motif2 Start=104 Length=8
Motif3 Start=43 Length=8
Motif4 Start=291 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay