3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04313

Details:

PFam ID : PF04313

PFam Domain Description : Type I restriction enzyme R protein N terminus (HSDR_N)

Number of Sequence in 50% Dataset : 214

Number of Sequence in Full Dataset : 1511

Average sequence length: 176.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04313	Q9R481_RHIRD_5_127	81.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04313	F2NRI2_9SPIO_9_142	99.5

Sequence based PCA Plot of the family - PF04313 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=66 Length=8
Motif4 Start=110 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay