3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04309

Details:

PFam ID : PF04309

PFam Domain Description : Glycerol-3-phosphate responsive antiterminator

Number of Sequence in 50% Dataset : 54

Number of Sequence in Full Dataset : 201

Average sequence length: 169.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04309	F0GJ68_9BURK_1_38	92.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04309	B6I035_ECOSE_6_183	100

Sequence based PCA Plot of the family - PF04309 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=35 Length=8
Motif2 Start=10 Length=8
Motif3 Start=26 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay