3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04299

Details:

PFam ID : PF04299

PFam Domain Description : FMN-dependent dehydrogenase

Number of Sequence in 50% Dataset : 85

Number of Sequence in Full Dataset : 383

Average sequence length: 164.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04299	B2SIU4_XANOP_1_107	94.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04299	B6HSF2_PENCW_1_213	100

Sequence based PCA Plot of the family - PF04299 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=31 Length=8
Motif2 Start=22 Length=8
Motif3 Start=65 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay