3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04295

Details:

PFam ID : PF04295

PFam Domain Description : D-galactarate dehydratase / Altronate hydrolase, C terminus

Number of Sequence in 50% Dataset : 55

Number of Sequence in Full Dataset : 487

Average sequence length: 378.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04295	C9RBH8_AMMDK_1_168	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04295	D5EPK5_CORAD_579_783	100

Sequence based PCA Plot of the family - PF04295 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=112 Length=8
Motif3 Start=42 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay