3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04294

Details:

PFam ID : PF04294

PFam Domain Description : VanW like protein

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 418

Average sequence length: 131.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04294	C9RBH8_AMMDK_1_168	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04294	C7Q0R5_CATAD_1049_1197	100

Sequence based PCA Plot of the family - PF04294 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=75 Length=8
Motif2 Start=89 Length=8
Motif3 Start=19 Length=8
Motif4 Start=40 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay