3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04290

Details:

PFam ID : PF04290

PFam Domain Description : Tripartite ATP-independent periplasmic transporters, DctQ component

Number of Sequence in 50% Dataset : 809

Number of Sequence in Full Dataset : 2437

Average sequence length: 135.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04290	Q0FW68_9RHOB_1_79	97.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04290	B9NNC9_9RHOB_269_438	100

Sequence based PCA Plot of the family - PF04290 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=17 Length=8
Motif2 Start=30 Length=18
Motif3 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay