3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04288

Details:

PFam ID : PF04288

PFam Domain Description : MukE-like family

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 72

Average sequence length: 223.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04288	O30870_HAEIF_9_103	14.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04288	A9MTC9_SALPB_13_245	100

Sequence based PCA Plot of the family - PF04288 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=18 Length=8
Motif2 Start=9 Length=8
Motif3 Start=173 Length=8
Motif4 Start=59 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay