3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04287

Details:

PFam ID : PF04287

PFam Domain Description : tRNA pseudouridine synthase C

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 160

Average sequence length: 99.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04287	A1ST62_PSYIN_4_111	89.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04287	A1ST62_PSYIN_4_111	100

Sequence based PCA Plot of the family - PF04287 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=15 Length=8
Motif2 Start=100 Length=8
Motif3 Start=81 Length=8
Motif4 Start=54 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay