3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04283

Details:

PFam ID : PF04283

PFam Domain Description : Chemotaxis signal transduction system protein F from archaea

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 58

Average sequence length: 217.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04283	B8GK93_METPE_78_200	78.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04283	C9RG61_METVM_6_250	100

Sequence based PCA Plot of the family - PF04283 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=122 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay