3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04282

Details:

PFam ID : PF04282

PFam Domain Description : Family of unknown function (DUF438)

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 124

Average sequence length: 69.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04282	B8D3S7_DESK1_5_48	23.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04282	D7JFY0_9BACT_14_85	100

Sequence based PCA Plot of the family - PF04282 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=11 Length=8
Motif2 Start=28 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay