3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04280

Details:

PFam ID : PF04280

PFam Domain Description : Tim44-like domain

Number of Sequence in 50% Dataset : 117

Number of Sequence in Full Dataset : 579

Average sequence length: 141.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04280	E8PAE6_ACIB1_2_77	95.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04280	F0VLJ6_NEOCA_452_617	100

Sequence based PCA Plot of the family - PF04280 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=13 Length=27
Motif2 Start=133 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay