3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04279

Details:

PFam ID : PF04279

PFam Domain Description : Intracellular septation protein A

Number of Sequence in 50% Dataset : 61

Number of Sequence in Full Dataset : 403

Average sequence length: 177.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04279	E1WXF7_BACMS_9_185	65

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04279	Q0BWF0_HYPNA_28_246	100

Sequence based PCA Plot of the family - PF04279 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=73 Length=17
Motif2 Start=5 Length=8
Motif3 Start=145 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay