Home Browse Search Download Help Group

3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04278
Details:

PFam ID : PF04278

PFam Domain Description : Tic22-like family

Number of Sequence in 50% Dataset : 62

Number of Sequence in Full Dataset : 121

Average sequence length: 218.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF04278Q4XKC3_PLACH_7_8293.4
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF04278Q6B8N3_GRATL_192_40799.1
Sequence based PCA Plot of the family - PF04278 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay