3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04278 Details: PFam ID : PF04278 PFam Domain Description : Tic22-like family Number of Sequence in 50% Dataset : 62 Number of Sequence in Full Dataset : 121 Average sequence length: 218.0 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF04278Q4XKC3_PLACH_7_8293.4 HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF04278Q6B8N3_GRATL_192_40799.1 Sequence based PCA Plot of the family - PF04278 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 4 motifsMotif1 Start=28 Length=8Motif2 Start=19 Length=8Motif3 Start=10 Length=8Motif4 Start=1 Length=8 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF04278
PFam Domain Description : Tic22-like family
Number of Sequence in 50% Dataset : 62
Number of Sequence in Full Dataset : 121
Average sequence length: 218.0
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER