3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04277

Details:

PFam ID : PF04277

PFam Domain Description : Oxaloacetate decarboxylase, gamma chain

Number of Sequence in 50% Dataset : 141

Number of Sequence in Full Dataset : 378

Average sequence length: 75.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04277	E8K8F0_STRPA_14_163	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04277	B0P932_9FIRM_4_113	100

Sequence based PCA Plot of the family - PF04277 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=9 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay