3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04266

Details:

PFam ID : PF04266

PFam Domain Description : ASCH domain

Number of Sequence in 50% Dataset : 161

Number of Sequence in Full Dataset : 781

Average sequence length: 108.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04266	Q4C3F6_CROWT_8_147	81.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04266	Q4C3F6_CROWT_8_147	62

Sequence based PCA Plot of the family - PF04266 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=14 Length=17
Motif2 Start=1 Length=8
Motif3 Start=70 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay