3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04265

Details:

PFam ID : PF04265

PFam Domain Description : Thiamin pyrophosphokinase, vitamin B1 binding domain

Number of Sequence in 50% Dataset : 122

Number of Sequence in Full Dataset : 600

Average sequence length: 68.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04265	E6PJI4_9ZZZZ_1_61	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04265	D2RMT9_ACIFV_161_217	100

Sequence based PCA Plot of the family - PF04265 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=37 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay