3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04264

Details:

PFam ID : PF04264

PFam Domain Description : YceI-like domain

Number of Sequence in 50% Dataset : 358

Number of Sequence in Full Dataset : 1359

Average sequence length: 164.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04264	E6PJI4_9ZZZZ_1_61	83.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04264	D8NYP6_RALSO_1_91	99.7

Sequence based PCA Plot of the family - PF04264 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=216 Length=8
Motif2 Start=71 Length=8
Motif3 Start=99 Length=11
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay