3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04263

Details:

PFam ID : PF04263

PFam Domain Description : Thiamin pyrophosphokinase, catalytic domain

Number of Sequence in 50% Dataset : 177

Number of Sequence in Full Dataset : 800

Average sequence length: 120.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04263	Q6ZQX6_HUMAN_26_118	99.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04263	E9C7P0_9EUKA_52_266	100

Sequence based PCA Plot of the family - PF04263 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=136 Length=8
Motif2 Start=107 Length=8
Motif3 Start=20 Length=8
Motif4 Start=163 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay