3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04262

Details:

PFam ID : PF04262

PFam Domain Description : Glutamate-cysteine ligase

Number of Sequence in 50% Dataset : 53

Number of Sequence in Full Dataset : 328

Average sequence length: 312.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04262	F0IHD3_9FLAO_1_91	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04262	E6W0P2_DESIS_12_390	99.6

Sequence based PCA Plot of the family - PF04262 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=51 Length=17
Motif2 Start=22 Length=8
Motif3 Start=93 Length=11
Motif4 Start=320 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay