3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04261

Details:

PFam ID : PF04261

PFam Domain Description : Dyp-type peroxidase family

Number of Sequence in 50% Dataset : 93

Number of Sequence in Full Dataset : 619

Average sequence length: 296.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04261	F0IHD3_9FLAO_1_91	78.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04261	A3ES43_9BACT_1_71	100

Sequence based PCA Plot of the family - PF04261 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=3 Length=18
Motif2 Start=121 Length=8
Motif3 Start=65 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay