3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04257

Details:

PFam ID : PF04257

PFam Domain Description : Exodeoxyribonuclease V, gamma subunit

Number of Sequence in 50% Dataset : 157

Number of Sequence in Full Dataset : 478

Average sequence length: 634.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04257	A0B6M0_METTP_1_32	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04257	F0SZ82_SYNGF_202_445	100

Sequence based PCA Plot of the family - PF04257 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=61 Length=8
Motif2 Start=106 Length=8
Motif3 Start=93 Length=8
Motif4 Start=166 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay