3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04253

Details:

PFam ID : PF04253

PFam Domain Description : Transferrin receptor-like dimerisation domain

Number of Sequence in 50% Dataset : 102

Number of Sequence in Full Dataset : 302

Average sequence length: 119.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04253	E7R445_PICAD_679_762	86.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04253	A7TBT9_NEMVE_153_222	100

Sequence based PCA Plot of the family - PF04253 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=133 Length=8
Motif2 Start=13 Length=8
Motif3 Start=73 Length=8
Motif4 Start=96 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay