3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04248

Details:

PFam ID : PF04248

PFam Domain Description : Domain of unknown function (DUF427)

Number of Sequence in 50% Dataset : 35

Number of Sequence in Full Dataset : 518

Average sequence length: 92.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04248	C6SNL3_NEIME_5_68	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04248	D3CVV0_9ACTO_1_103	100

Sequence based PCA Plot of the family - PF04248 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=14 Length=21
Motif3 Start=92 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay