3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04247

Details:

PFam ID : PF04247

PFam Domain Description : Invasion gene expression up-regulator, SirB

Number of Sequence in 50% Dataset : 48

Number of Sequence in Full Dataset : 167

Average sequence length: 118.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04247	C6SNL3_NEIME_5_68	80.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04247	A7HRU5_PARL1_4_131	100

Sequence based PCA Plot of the family - PF04247 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay