3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04245

Details:

PFam ID : PF04245

PFam Domain Description : 37-kD nucleoid-associated bacterial protein

Number of Sequence in 50% Dataset : 144

Number of Sequence in Full Dataset : 335

Average sequence length: 314.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04245	A3II31_9CHRO_1_62	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04245	Q4K6S1_PSEF5_8_369	99.4

Sequence based PCA Plot of the family - PF04245 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=286 Length=8
Motif3 Start=181 Length=8
Motif4 Start=312 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay