3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04244

Details:

PFam ID : PF04244

PFam Domain Description : Deoxyribodipyrimidine photo-lyase-related protein

Number of Sequence in 50% Dataset : 55

Number of Sequence in Full Dataset : 305

Average sequence length: 216.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04244	A3II31_9CHRO_1_62	92.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04244	D5SWH4_PLAL2_18_246	100

Sequence based PCA Plot of the family - PF04244 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=218 Length=8
Motif2 Start=151 Length=11
Motif3 Start=3 Length=8
Motif4 Start=171 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay