3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04236

Details:

PFam ID : PF04236

PFam Domain Description : Tc5 transposase C-terminal domain

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 20

Average sequence length: 50.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04236	Q27397_CAEEL_471_531	22.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04236	Q27397_CAEEL_471_531	100

Sequence based PCA Plot of the family - PF04236 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=42

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay